PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000602139
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 340aa    MW: 36476.1 Da    PI: 7.0021
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000602139genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88e-32161219259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+ver+++dp+++++tY+geHnh+
  MDP0000602139 161 SDIWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERNRSDPNMFIVTYTGEHNHP 219
                    79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.968155221IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-31155221IPR003657WRKY domain
SuperFamilySSF1182903.92E-27159221IPR003657WRKY domain
SMARTSM007748.0E-39160220IPR003657WRKY domain
PfamPF031065.3E-27162219IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEDDWDLQAV VRGCSTATAT TTTSSTRTPS TAATASFNIS GFHSNPAAAS FSSFGPTSPQ  60
QQLLFSLPLP DPIIKPRNAI EELHELYKPF FPKSQPSLSS PQITPPTLSP LTSLSPLTTP  120
KDPRHPIHQQ QQTQHSKPSS STTTTTTTXR SKKVPVEALS SDIWAWRKYG QKPIKGSPYP  180
RGYYRCSSSK GCMARKQVER NRSDPNMFIV TYTGEHNHPA PTHRNSLAGS TRQKPFSPQT  240
ATRGDSAKPA SPTTSASADE EPVVAPQSTT VESSCKEEKG SPLITDEEDE LLGMCDSVVS  300
DDFFVGLDGL AGDYFSDHST GSFGMPWISS SAATAAGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-181592211677Probable WRKY transcription factor 4
2lex_A4e-181592211677Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.293971e-137fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008345081.10.0PREDICTED: WRKY transcription factor 22
TrEMBLM5X0141e-162M5X014_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s08600.17e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-61WRKY family protein